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First Image of the Actin Nucleus: The Seed That Grows the Cytoskeleton

12/8/2025

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For 50 years, biologists have known that cells build their internal scaffolding from actin filaments, but we've never actually seen how filament formation begins. I'm excited to share that our collaborative team has solved this basic mystery about the cytoskeleton.

Using x-ray crystallography, the Robinson group captured the first atomic-resolution structure of an actin nucleus: the three-molecule complex that starts every actin filament. Their secret weapon? Villin protein from Paralvinella sulfincola, a remarkable worm that thrives in scalding deep-sea thermal vents. Collected by submarine, the worm’s naturally stable actin-binding protein proved perfect for crystallization.

The three actin molecules in the nucleus aren't identical: each adopts a different shape, representing different stages of the transformation from individual units to filament building blocks. They also discovered a molecular gate that dynamically opens and closes to allow new actin molecules to join the growing filament.

The structure also illuminates how actin-binding proteins cut filaments: they exploit natural fluctuations to compete for binding sites and destabilize the structure. This principle likely applies to other actin-binding proteins relevant to disease and development, opening new avenues for intervention.

This work was led by the Robinson group, with contributions from the Girguis (marine biology) and Copley (genomics) groups.

Our paper is out now in Science Advances. https://doi.org/10.1126/sciadv.adw6915


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Using a long-Stokes-shift dye for two-photon microscopy

12/4/2025

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Two colors from one laser: new preprint from my lab about a novel dye application.

Motion artifacts and anatomical orientation can pose challenges to two-photon live imaging. A second color channel helps with both problems—but usually requires a second expensive laser. We found another way. The dye ATTO 490LS is a long-Stokes-shift fluorescent dye that's been around for a decade, but its two-photon properties were unknown. We've now found that 490LS works beautifully with a 920 nm laser, the same wavelength used for GFP and GCaMP imaging. Excite with 920 nm, collect both green and red light with two detectors. One laser, two colors.

Having a stable red marker like 490LS lets you find a region of interest and distinguish real calcium transients from motion-induced changes. We're now working toward HaloTag and other conjugates for in vivo chemogenetic labeling, allowing calcium imaging with a stable reference. Please let us know if you're interested in trying some.

Preprint now on bioRxiv: https://www.biorxiv.org/content/10.1101/2025.11.21.689649v2.full

Work was led by King Yee Cheung, with help from Xianyuan Zhang , Danesha Devini Suresh, Masahiro Fukuda, and the NUS Microscopy Core.
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Genome of a thermal-vent worm yields insight into animal heat tolerance

12/4/2025

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How do neurons keep working at the thermal limit of animal life?

Our new chromosome-scale genome of the Pompeii worm starts to answer. It has a conservative genome but a finely tuned proteome: expanded globins, anaerobic enzymes, and new sulfur chemistry. These let the worm thrive while grazing on bacteria in hot, dark, oxygen-starved vents at the bottom of the Pacific Ocean.

This new proteome now offers thermostable tools for biochemistry and a window into physiology at extremes.

This amazing project was led by Sami EL HILALI and Richard Copley, with contributions from the Robinson, Hoelz, Martín-Durán, and Jollivet groups.
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Read the paper in BMC Biology https://doi.org/10.1186/s12915-025-02369-7
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